Package: romic 1.3.2

Sean Hackett

romic: R for High-Dimensional Molecular Data

Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.

Authors:Sean Hackett [aut, cre], Calico Life Sciences LLC [cph, fnd]

romic_1.3.2.tar.gz
romic_1.3.2.zip(r-4.7-any)romic_1.3.2.zip(r-4.6-any)romic_1.3.2.zip(r-4.5-any)
romic_1.3.2.tgz(r-4.6-any)romic_1.3.2.tgz(r-4.5-any)
romic_1.3.2.tar.gz(r-4.7-any)romic_1.3.2.tar.gz(r-4.6-any)
romic_1.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
romic/json (API)

# Install 'romic' in R:

install.packages('romic', repos = c('https://shackett.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shackett/romic/issues

Pkgdown/docs site:https://www.shackett.org

Datasets:

brauer_2008 - Brauer 2008
brauer_2008_tidy - Brauer 2008
brauer_2008_triple - Brauer 2008

On CRAN:

4.51 score 1 stars 16 scripts 401 downloads 60 exports 66 dependencies

Last updated from:2740a3ff81. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	202
source / vignettes	OK	219
linux-release	OK	182
macos-release	OK	172
macos-oldrel	OK	233
windows-devel	OK	118
windows-release	OK	159
windows-oldrel	OK	124
wasm-release	OK	157

Exports:add_pcs app_flow app_heatmap app_pcs calculate_sample_mahalanobis_distances center_tomic check_design check_tomic convert_wide_to_tidy_omic create_tidy_omic create_triple_omic export_tomic_as_tidy export_tomic_as_triple export_tomic_as_wide filter_tomic filterInput filterServer format_names_for_plotting get_design_tbl get_tomic_table ggBivOutput ggBivServer ggplotOutput ggplotServer ggUnivOutput ggUnivServer hclust_order impute_missing_values lassoInput lassoServer organizeInput organizeServer plot_bivariate plot_heatmap plot_missing_values plot_univariate plotsaverInput plotsaverServer reform_tidy_omic remove_missing_values shiny_filter_test shiny_ggbiv_test shiny_ggplot_test shiny_gguniv_test shiny_lasso_test shiny_lasso_test_reactval shiny_organize_test shiny_plotsaver_test shiny_sort_test sort_tomic sortInput sortServer tidy_to_triple tomic_sort_status tomic_to tomic_to_matrix triple_to_tidy update_sample_factors update_tidy_omic update_tomic

Dependencies:backports base64enc bit bit64 bslib cachem checkmate cli clipr commonmark cpp11 crayon digest dplyr farver fastmap fontawesome fs generics ggplot2 glue gtable hms htmltools httpuv isoband jquerylib jsonlite labeling later lifecycle magrittr memoise mime otel pillar pkgconfig plyr prettyunits progress promises purrr R6 rappdirs RColorBrewer Rcpp readr reshape2 rlang S7 sass scales shiny sourcetools stringi stringr tibble tidyr tidyselect tzdb utf8 vctrs viridisLite vroom withr xtable

R'Omic: high-dimensional data manipulation

Rendered fromromic.Rmdusingknitr::rmarkdown

Last update: 2026-01-19
Started: 2021-05-14

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add PCA Loadings	add_pcs
Flow	app_flow
Interactive Heatmap	app_heatmap
PC Plot	app_pcs
Brauer 2008	brauer_2008 brauer_2008_tidy brauer_2008_triple
Calculate Sample Mahalanobis Distances	calculate_sample_mahalanobis_distances
Center T* Omic	center_tomic
Check Design	check_design
Check Tidy Omic	check_tidy_omic
Check T*Omic	check_tomic
Check Triple Omic	check_triple_omic
Convert Wide to Tidy Omic	convert_wide_to_tidy_omic
Create Tidy Omic	create_tidy_omic
Create Triple Omic	create_triple_omic
Downsample Heatmap	downsample_heatmap
Export T*Omic in Tidy Format	export_tomic_as_tidy
Export T*Omic as Triple	export_tomic_as_triple
Export T*Omic as Wide Data	export_tomic_as_wide
Filter T* Omics	filter_tomic
Filter Input	filterInput
Filter Server	filterServer
Format Names for Plotting	format_names_for_plotting
Get Design Table	get_design_tbl
Get Tomic Table	get_tomic_table
ggBivariate Output	ggBivOutput
ggBivariate Server	ggBivServer
ggplot Output	ggplotOutput
ggplot Server	ggplotServer
ggUnivariate Output	ggUnivOutput
ggUnivariate Server	ggUnivServer
Hierarchical clustering order	hclust_order
Impute Missing Values	impute_missing_values
Infer Tomic Table Type	infer_tomic_table_type
Lasso Input	lassoInput
Lasso Server	lassoServer
Organize Input	organizeInput
Organize Servers	organizeServer
Bivariate Plot	plot_bivariate
Plot Heatmap	plot_heatmap
Plot Missing Values	plot_missing_values
Univariate Plot	plot_univariate
Plot Saver Input	plotsaverInput
Plot Saver Server	plotsaverServer
Prepare Example Datasets	prepare_example_datasets
Reconcile Triple Omic	reconcile_triple_omic
Reform Tidy Omic	reform_tidy_omic
Remove Missing Values	remove_missing_values
Shiny Filter Test	shiny_filter_test
Shiny ggBivariate Test	shiny_ggbiv_test
Shiny ggplot Test	shiny_ggplot_test
Shiny ggUnivariate Test	shiny_gguniv_test
Shiny Lasso Test	shiny_lasso_test
Shiny Lasso Test w/ Reactive Values	shiny_lasso_test_reactval
Shiny Organize Test	shiny_organize_test
Shiny Plot Saver Test	shiny_plotsaver_test
Shiny Sort Test	shiny_sort_test
Sort Triple Omic	sort_tomic
Sort Triple Arrange	sort_triple_arrange
Sort Triple Hclust	sort_triple_hclust
Sort Input	sortInput
Sort Server	sortServer
Tidy omic to triple omic	tidy_to_triple
T* Omic Sort Status	tomic_sort_status
T* Omic To	tomic_to
Tomic To Matrix	tomic_to_matrix
Triple Omic to Tidy Omic	triple_to_tidy
Try brushedPoints	try_brushedPoints
Update Sample Factors	update_sample_factors
Update Tidy Omic	update_tidy_omic
Update T* Omic	update_tomic
Var Partial Match	var_partial_match